Aspi01Gene14539.t1 (CHR20, ATRX, Aspi01Gene14539)

Aliases : CHR20, ATRX, Aspi01Gene14539

Description : chromatin remodeling factor *(ATRX) & original description: none

Gene families : OG0003866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003866_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene14539.t1

Target	Alias	Description	ECC score	Gene Family Method
Ala_g21446	CHR20, ATRX	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16593	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09035	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.11G086900.1	CHR20, ATRX,...	chromatin remodeling factor *(ATRX) & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021760.3	CHR20, ATRX	Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
GSVIVT01023393001	CHR20, ATRX	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
LOC_Os10g31970.1	CHR20, ATRX,...	chromatin remodeling factor (ATRX)	0.02	OrthoFinder output from all 47 species
Len_g57086	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.03	OrthoFinder output from all 47 species
Mp5g21000.1	CHR20, ATRX	chromatin remodeling factor (ATRX)	0.02	OrthoFinder output from all 47 species
Msp_g14674	CHR20, ATRX	chromatin remodeling factor *(ATRX) & original description: none	0.05	OrthoFinder output from all 47 species
Smo441095	CHR20, ATRX	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Solyc04g050150.4.1	CHR20, ATRX,...	chromatin remodeling factor (ATRX)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	1345	1667
IPR001650	Helicase_C	1749	1874
IPR041430	ADD_ATRX	715	758

External Links

No external refs found!