Aspi01Gene14150.t2 (CHR11, Aspi01Gene14150)

Aliases : CHR11, Aspi01Gene14150

Description : not classified & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene14150.t2

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00086p00165640	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
AT2G13370	CHR5	chromatin remodeling 5	0.04	OrthoFinder output from all 47 species
AT2G28290	SYD, CHR3	P-loop containing nucleoside triphosphate hydrolases...	0.03	OrthoFinder output from all 47 species
AT5G44800	PKR1, CHR4	chromatin remodeling 4	0.03	OrthoFinder output from all 47 species
Adi_g004816	SYD, CHR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g011533	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g011955	SYD, CHR3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058025	CHR01, CHR1,...	chromatin remodeling factor *(DDM1) & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g41954	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Ala_g11306	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11507	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ala_g36219	ATCHR12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01984	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Als_g59182	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.05	OrthoFinder output from all 47 species
Aob_g29989	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Aop_g13607	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.05	OrthoFinder output from all 47 species
Aspi01Gene24030.t1	CHR5, Aspi01Gene24030	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene47130.t1	SYD, CHR3,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene47132.t1	SYD, CHR3,...	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene62384.t3	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.07	OrthoFinder output from all 47 species
Azfi_s0043.g027097	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Cba_g02115	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Cba_g06827	PKR1, CHR4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.10G020300.1	CHR5, Ceric.10G020300	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021275.25	CHR11	Probable chromatin-remodeling complex ATPase chain...	0.01	OrthoFinder output from all 47 species
Cre12.g508150	CHR11	Chromatin organisation.chromatin remodeling...	0.01	OrthoFinder output from all 47 species
Dcu_g03216	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Dcu_g07767	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g38948	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g42511	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g15247	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
GSVIVT01012117001	PKR1, CHR4	RNA biosynthesis.transcriptional activation.PHD finger...	0.03	OrthoFinder output from all 47 species
GSVIVT01017791001	CHR17	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01035901001	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01037235001	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
LOC_Os06g08480.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.03	OrthoFinder output from all 47 species
LOC_Os07g46590.1	CHR5, LOC_Os07g46590	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	OrthoFinder output from all 47 species
Len_g08675	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Len_g29294	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.04	OrthoFinder output from all 47 species
Lfl_g04300	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g30624	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
MA_10430012g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
MA_141135g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder output from all 47 species
MA_8990972g0010	PKL, GYM, CHR6,...	CHD3-type chromatin-remodeling factor PICKLE...	0.02	OrthoFinder output from all 47 species
Msp_g13206	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Nbi_g12189	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Pir_g15839	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04716	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ppi_g07635	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007981	PKL, GYM, CHR6,...	WRKY-type transcription factor & original description: CDS=1-4410	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010159	CHR11	EC_2.3 acyltransferase & original description: CDS=24-2432	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0046.g013333	PKL, GYM, CHR6,...	not classified & original description: CDS=412-5028	0.03	OrthoFinder output from all 47 species
Sam_g14615	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g17473	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29292	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Sam_g49524	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo155996	PKL, GYM, CHR6,...	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Smo440203	CHR11	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Smo440815	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Spa_g02554	PKL, GYM, CHR6,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Spa_g30961	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Zm00001e010722_P005	ATCHR12, Zm00001e010722	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e010908_P001	CHR5, Zm00001e010908	Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Zm00001e040406_P002	ATCHR12, Zm00001e040406	chromatin remodeling factor (Snf2)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	176	411

External Links

No external refs found!

Aspi01Gene14150.t2 (CHR11, Aspi01Gene14150)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation