Aliases : NFD03, HMGB3, NFD3, Aspi01Gene12485
Description : DNA bending architectural protein *(HMG-B) & original description: none
Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00171p00070550 | HMGB6,... | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
AT4G23800 | No alias | HMG (high mobility group) box protein | 0.04 | OrthoFinder output from all 47 species | |
AT5G23420 | HMGB6 | high-mobility group box 6 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g007317 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Adi_g012117 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Adi_g018094 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.09 | OrthoFinder output from all 47 species | |
Adi_g080941 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
Adi_g080942 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
Adi_g124291 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Ala_g04363 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
Ala_g24042 | No alias | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
Ala_g28166 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.08 | OrthoFinder output from all 47 species | |
Als_g13137 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Als_g13580 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
Als_g44054 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g06071 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g23124 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Aop_g38218 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Aop_g48668 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g10021 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Cba_g11082 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.03G026600.1 | HMGB6, Ceric.03G026600 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.23G068700.1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.37G021800.1 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g07597 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Dac_g07598 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Dac_g12415 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Dac_g19456 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Dac_g20756 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g36188 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g02569 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g39139 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01019504001 | No alias | High mobility group B protein 13 OS=Arabidopsis thaliana | 0.07 | OrthoFinder output from all 47 species | |
GSVIVT01034361001 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana | 0.04 | OrthoFinder output from all 47 species | |
Gb_00374 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Gb_32435 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Gb_34784 | HMGB6 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g15810.1 | LOC_Os02g15810 | High mobility group B protein 13 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os08g01100.1 | HMGB6, LOC_Os08g01100 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Len_g16826 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Len_g21317 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g05840 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g21733 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.01 | OrthoFinder output from all 47 species | |
Lfl_g24536 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
MA_783123g0010 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
MA_86565g0010 | HMGB6 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Mp2g12330.1 | No alias | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g01263 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Msp_g38531 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Nbi_g06088 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
Nbi_g12748 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Nbi_g22023 | NFD4, HMGB4, NFD04 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Ppi_g04305 | NFD1, HMGB1 | DNA bending architectural protein *(HMG-B) & original... | 0.06 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0014.g006223 | NFD2, HMG BETA... | not classified & original description: CDS=1-750 | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0043.g012915 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0055.g014473 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g17368 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g27294 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g31468 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Sam_g36464 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g40555 | No alias | DNA bending architectural protein *(HMG-B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Solyc04g008820.3.1 | HMGB6, Solyc04g008820 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
Solyc08g082070.3.1 | Solyc08g082070 | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g04270 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g10432 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Spa_g15059 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Tin_g00083 | NFD03, HMGB3, NFD3 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Tin_g03032 | HMGB6 | DNA bending architectural protein *(HMG-B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Tin_g45467 | NFD2, HMG BETA... | DNA bending architectural protein *(HMG-B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Zm00001e010305_P004 | NFD2, HMG BETA... | HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 113.0) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e014266_P001 | Zm00001e014266 | High mobility group B protein 6 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e024274_P002 | HMGB6, Zm00001e024274 | High mobility group B protein 7 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR009071 | HMG_box_dom | 26 | 95 |
No external refs found! |