Aspi01Gene12313.t1 (HVT1, ATVT-1, Aspi01Gene12313)

Aliases : HVT1, ATVT-1, Aspi01Gene12313

Description : not classified & original description: none

Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene12313.t1

Target	Alias	Description	ECC score	Gene Family Method
AT2G30800	HVT1, ATVT-1	helicase in vascular tissue and tapetum	0.02	OrthoFinder output from all 47 species
Cba_g16527	HVT1, ATVT-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os01g56190.1	HVT1, ATVT-1,...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_10434659g0010	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	497	618
IPR011709	DEAD-box_helicase_OB_fold	843	935
IPR007502	Helicase-assoc_dom	683	774
IPR011545	DEAD/DEAH_box_helicase_dom	133	288

External Links

No external refs found!