Aspi01Gene10110.t1 (ABCB19, ATABCB19,...)

Aliases : ABCB19, ATABCB19, MDR1, MDR11, ATPGP19, ATMDR1, ATMDR11, PGP19, Aspi01Gene10110

Description : ABC-B-type transporter *(AMN3) & original description: none

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene10110.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00132920	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AT3G28360	PGP16	P-glycoprotein 16	0.02	OrthoFinder output from all 47 species
Aop_g36046	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0099.g044118	PGP20	subfamily ABCB transporter & original description: CDS=2010-6257	0.03	OrthoFinder output from all 47 species
Ceric.07G010800.1	PGP11, Ceric.07G010800	subfamily ABCB transporter & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000572.4	ATPGP4, PGP4, ABCB4, MDR4	ABC transporter B family member 4 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre17.g725150	ATPGP4, PGP4, ABCB4, MDR4	ABC transporter B family member 7 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Dac_g38327	PGP9	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g41259	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01028256001	PGP11	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
MA_18863g0010	PGP11	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp7g16060.1	PGP11	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Pir_g56055	PGP21	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g23699	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c6_7260V3.1	ABCB19,...	ATP binding cassette subfamily B19	0.01	OrthoFinder output from all 47 species
Ppi_g18841	PGP11	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017905	PGP11	not classified & original description: CDS=139-861	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020710	ABCB19,...	not classified & original description: CDS=1-1380	0.04	OrthoFinder output from all 47 species
Sam_g00802	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo176522	ATPGP4, PGP4, ABCB4, MDR4	Solute transport.primary active transport.ABC...	0.04	OrthoFinder output from all 47 species
Smo419451	No alias	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Zm00001e028117_P001	PGP11, Zm00001e028117	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	361	625
IPR011527	ABC1_TM_dom	1010	1280
IPR003439	ABC_transporter-like_ATP-bd	699	847
IPR003439	ABC_transporter-like_ATP-bd	1351	1500

External Links

No external refs found!

Aspi01Gene10110.t1 (ABCB19, ATABCB19,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation