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  5. Aspi01Gene09691.t1

Aspi01Gene09691.t1 (GRP2B, ATGRP2B,...)


Aliases : GRP2B, ATGRP2B, ATCSP4, Aspi01Gene09691

Description : cold-responsive mRNA chaperone *(CSD) & original description: none


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene09691.t1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
Adi_g042846 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0034.g025234 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Ceric.03G072700.1 GRP2B, ATGRP2B,... cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species
Ore_g15365 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010185 ATCSP2, GRP2, CSDP2, CSP2 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0083.g018174 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019874 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Solyc10g055250.1.1 ATCSP2, GRP2,... RNA chaperone (CSP). mRNA chaperone (CSD) 0.03 OrthoFinder output from all 47 species
Zm00001e041725_P001 CSDP1, Zm00001e041725 RNA chaperone (CSP). mRNA chaperone (CSD) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 67 131
IPR001878 Znf_CCHC 208 223
IPR001878 Znf_CCHC 176 192
No external refs found!