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  5. Aspi01Gene09486.t1

Aspi01Gene09486.t1 (BUM1, SHL, STM, WAM,...)


Aliases : BUM1, SHL, STM, WAM, WAM1, BUM, Aspi01Gene09486

Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene09486.t1
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00169620 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 OrthoFinder output from all 47 species
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g060986 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107007 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17223 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63434.t1 KNAT4, Aspi01Gene63434 KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g03334 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10872 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23862 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013790001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
LOC_Os03g47016.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os03g51690.2 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os03g51710.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Len_g22685 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27135 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25529 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25530 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10499 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001773 KNAT6, KNAT6L, KNAT6S not classified & original description: CDS=1-1014 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018782 KNAT2, ATK1 not classified & original description: CDS=1-1071 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026748 KNAT3 KNOX-type transcription factor & original description: CDS=1-885 0.03 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e039044_P001 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005540 KNOX1 171 210
IPR005539 ELK_dom 340 360
IPR005541 KNOX2 223 268
No external refs found!