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  5. Aspi01Gene07828.t1

Aspi01Gene07828.t1 (PUB26, Aspi01Gene07828)


Aliases : PUB26, Aspi01Gene07828

Description : not classified & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene07828.t1
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AT3G02840 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G11840 PUB24 plant U-box 24 0.02 OrthoFinder output from all 47 species
AT3G19380 PUB25 plant U-box 25 0.04 OrthoFinder output from all 47 species
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.03 OrthoFinder output from all 47 species
Ala_g02187 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30969 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01235 PUB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19337.t2 PUB26, Aspi01Gene19337 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.21G081600.1 PUB26, Ceric.21G081600 U-Box-group-III E3 ubiquitin ligase & original... 0.06 OrthoFinder output from all 47 species
Cre03.g185750 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g18954 PUB25 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46168 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007048001 No alias U-box domain-containing protein 30 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01037585001 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_17119 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os03g13740.1 LOC_Os03g13740 U-box domain-containing protein 20 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g34140.1 PUB29, ATPUB29,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g13870.1 LOC_Os06g13870 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os10g03440.1 LOC_Os10g03440 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10425865g0010 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10430196g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10433846g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_126399g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_58844g0020 PUB22 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_6335g0010 CMPG2, ATCMPG2 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
MA_779502g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_7928010g0010 PUB23 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_95662g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_95662g0020 PUB25 U-box domain-containing protein 27 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g25593 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06628 PUB25 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08920 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08921 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05122 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c24_16470V3.1 ATPUB17, PUB17,... RING/U-box superfamily protein with ARM repeat domain 0.02 OrthoFinder output from all 47 species
Pp3c4_20710V3.1 PUB26, Pp3c4_20710 plant U-box 25 0.02 OrthoFinder output from all 47 species
Smo172230 No alias U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g007050.3.1 PUB24, Solyc01g007050 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g09127 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e041397_P001 PUB23, Zm00001e041397 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 12 76
No external refs found!