Aspi01Gene07515.t1 (APUM4, PUM4, Aspi01Gene07515)


Aliases : APUM4, PUM4, Aspi01Gene07515

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene07515.t1

Target Alias Description ECC score Gene Family Method Actions
AT3G20250 PUM5, APUM5 pumilio 5 0.03 OrthoFinder output from all 47 species
Azfi_s2326.g110592 PUM1, APUM1 not classified & original description: CDS=3742-4032 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.15 PUM5, APUM5 No description available 0.01 OrthoFinder output from all 47 species
LOC_Os05g01910.1 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Pir_g15275 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 1053 1082
IPR001313 Pumilio_RNA-bd_rpt 827 860
IPR001313 Pumilio_RNA-bd_rpt 934 966
IPR001313 Pumilio_RNA-bd_rpt 862 895
IPR001313 Pumilio_RNA-bd_rpt 973 1004
IPR001313 Pumilio_RNA-bd_rpt 904 929
IPR001313 Pumilio_RNA-bd_rpt 1007 1041
IPR001313 Pumilio_RNA-bd_rpt 790 823
IPR012940 NABP 385 784
No external refs found!