Solyc01g009000.3.1 (Solyc01g009000.3)


Aliases : Solyc01g009000.3

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING Encodes a putative RING-H2 finger protein RHC1a. RING-H2 finger C1A (RHC1A)


Gene families : OG_01_0000020 (Gene family) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc01g009000.3.1
Cluster HCCA cluster: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g59760 Os03g0812200 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATCRT1 0.03 Gene family
LOC_Os08g36170 Os08g0464400 No description available 0.03 Gene family
MA_10432867g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
MA_76949g0010 No alias 27.3.99 RNA.regulation of transcription.unclassified... 0.02 Gene family
MA_79051g0010 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Solyc05g018050.1.1 Solyc05g018050.1 No description available 0.03 Gene family
Solyc06g072270.3.1 Solyc06g072270.3 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Zm00001d031741 GRMZM2G049346 No description available 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 190 232
IPR039525 RNF126-like_zinc-ribbon 7 37
No external refs found!