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  5. AMTR_s00107p00047780

AMTR_s00107p00047780 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00107.18

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.NUP93 scaffold nucleoporin


Gene families : OG_01_0004324 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004324_tree ,
OG_02_0005232 (LandPlants) Phylogenetic Tree(s): OG_02_0005232_tree ,
OG_03_0005542 (SeedPlants) Phylogenetic Tree(s): OG_03_0005542_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00107p00047780
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Cre17.g717800 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 Archaeplastida
Gb_32484 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.05 Archaeplastida
LOC_Os03g22690.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 Archaeplastida
MA_10435434g0020 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.06 Archaeplastida
MA_273054g0010 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.03 Archaeplastida
Mp2g23730.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.05 Archaeplastida
Pp3c6_19740V3.1 No alias Nucleoporin interacting component (Nup93/Nic96-like)... 0.02 Archaeplastida
Solyc04g016240.3.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 Archaeplastida
Zm00001e001657_P002 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.05 Archaeplastida
Gb_32484 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.05 LandPlants
LOC_Os03g22690.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 LandPlants
MA_10435434g0020 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.06 LandPlants
Mp2g23730.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.05 LandPlants
Pp3c6_19740V3.1 No alias Nucleoporin interacting component (Nup93/Nic96-like)... 0.02 LandPlants
Solyc04g016240.3.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 LandPlants
Zm00001e001657_P002 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 LandPlants
AT3G57350 No alias Nucleoporin interacting component (Nup93/Nic96-like)... 0.01 SeedPlants
Gb_32484 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.05 SeedPlants
LOC_Os03g22690.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 SeedPlants
MA_10435434g0020 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.06 SeedPlants
Solyc04g016240.3.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 SeedPlants
Zm00001e001657_P002 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.04 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006810 transport IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007231 Nucleoporin_int_Nup93/Nic96 233 827
No external refs found!