Aspi01Gene05317.t1 (PAB2, PABP2, ATPAB2,...)

Aliases : PAB2, PABP2, ATPAB2, Aspi01Gene05317

Description : mRNA poly-A-tail binding factor *(PABP) & original description: none

Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene05317.t1

Target	Alias	Description	ECC score	Gene Family Method
Als_g13165	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
MA_18005g0010	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor (PABP)	0.02	OrthoFinder output from all 47 species
Pnu_g30261	PAB8, PABP8	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011016	Znf_RING-CH	100	150
IPR002004	PABP_HYD	759	823
IPR000504	RRM_dom	393	461
IPR000504	RRM_dom	212	285
IPR000504	RRM_dom	496	563
IPR000504	RRM_dom	303	370

External Links

No external refs found!