Aspi01Gene05169.t1 (NUP96, PRE, SAR3,...)

Aliases : NUP96, PRE, SAR3, MOS3, Aspi01Gene05169

Description : nucleoporin of nuclear pore complex *(NUP98) & original description: none

Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene05169.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00231390	NUP96, PRE,...	Nuclear pore complex protein NUP96 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G80680	NUP96, PRE, SAR3, MOS3	SUPPRESSOR OF AUXIN RESISTANCE 3	0.03	OrthoFinder output from all 47 species
Adi_g086878	No alias	nucleoporin of nuclear pore complex *(NUP98) & original...	0.04	OrthoFinder output from all 47 species
Ceric.23G078300.1	Ceric.23G078300	nucleoporin of nuclear pore complex *(NUP98) & original...	0.03	OrthoFinder output from all 47 species
Cre02.g086887	No alias	Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
LOC_Os03g07580.1	NUP96, PRE,...	NUP96 scaffold nucleoporin of nuclear pore complex	0.04	OrthoFinder output from all 47 species
Ore_g26256	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo139717	NUP96, PRE, SAR3, MOS3	Protein translocation.nucleus.nucleocytoplasmic...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017056	structural constituent of nuclear pore	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021967	Nup98_C	725	1005
IPR007230	Nup98_auto-Pept-S59_dom	127	273

External Links

No external refs found!