Solyc00g188857.1.1 (Solyc00g188857.1)


Aliases : Solyc00g188857.1

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. auxin response factor 6 (ARF6)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc00g188857.1.1
Cluster HCCA cluster: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
AT1G35240 ARF20 auxin response factor 20 0.03 Gene family
LOC_Os02g04810 Os02g0141100 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
LOC_Os04g56850 Os04g0664400 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_92651g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.01 Gene family
Solyc03g031970.3.1 Solyc03g031970.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.08 Gene family
Solyc11g069500.2.1 Solyc11g069500.2 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.07 Gene family
Zm00001d001879 GRMZM2G078274 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d026590 GRMZM2G475882 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.01 Gene family
Zm00001d036593 GRMZM2G089640 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d041497 GRMZM2G073750 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 9 91
No external refs found!