Aspi01Gene01492.t1 (UPF1, ATUPF1, LBA1,...)

Aliases : UPF1, ATUPF1, LBA1, Aspi01Gene01492

Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none

Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene01492.t1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055495	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Aob_g17076	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Aop_g14327	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Cba_g31771	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Cba_g36240	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.37G063700.1	UPF1, ATUPF1,...	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Dac_g21455	UPF1, ATUPF1, LBA1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g11492	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Dcu_g20574	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
GSVIVT01013247001	UPF1, ATUPF1, LBA1	RNA processing.RNA decay.Nonsense-Mediated mRNA Decay...	0.08	OrthoFinder output from all 47 species
LOC_Os07g31340.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species
Mp1g01200.1	UPF1, ATUPF1, LBA1	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.04	OrthoFinder output from all 47 species
Ppi_g52670	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Sam_g25380	No alias	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.04	OrthoFinder output from all 47 species
Solyc08g007110.4.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species
Solyc08g077420.3.1	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.03	OrthoFinder output from all 47 species
Spa_g48750	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Spa_g52594	UPF1, ATUPF1, LBA1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Spa_g56668	UPF1, ATUPF1, LBA1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g07774	UPF1, ATUPF1, LBA1	Nonsense-Mediated mRNA Decay effector protein *(UPF1) &...	0.03	OrthoFinder output from all 47 species
Zm00001e010427_P002	UPF1, ATUPF1,...	UPF1 Nonsense-Mediated mRNA Decay effector protein	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR041677	DNA2/NAM7_AAA_11	246	343
IPR041679	DNA2/NAM7-like_C	353	548
IPR006935	Helicase/UvrB_N	142	207

External Links

No external refs found!

Aspi01Gene01492.t1 (UPF1, ATUPF1, LBA1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation