Dcu_g50243 (AtRABA5a, RABA5a)

Aliases : AtRABA5a, RABA5a

Description : A-class RAB GTPase & original description: none

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g50243

Target	Alias	Description	ECC score	Gene Family Method
AT1G05810	ARA-1, ATRABA5E,...	RAB GTPase homolog A5E	0.03	OrthoFinder output from all 47 species
AT1G73640	RABA6a, AtRABA6a	RAB GTPase homolog A6A	0.04	OrthoFinder output from all 47 species
AT4G18430	AtRABA1e, RABA1e	RAB GTPase homolog A1E	0.02	OrthoFinder output from all 47 species
Adi_g081036	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g09261	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g03446	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g36000	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene69385.t1	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g27746	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04229	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016457001	RABA2b,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
LOC_Os01g54590.1	ATRABA1B, RAB11,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
LOC_Os05g20050.1	RAB-A2C,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Len_g02212	AtRABA5d, RABA5d	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_113056g0010	AtRABA5a, RABA5a	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
MA_18685g0010	AtRABA5d, RABA5d	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
MpVg00760.1	AtRABA1f, RABA1f	No annotation	0.02	OrthoFinder output from all 47 species
Msp_g05544	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g04704	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23851	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g14192	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g05911	ATRABA2A,...	A-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g00826	RABA2b,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g61287	ARA-1, ATRABA5E,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009470	ATRABA2A,...	A-class RAB GTPase & original description: CDS=131-796	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026297	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=308-952	0.03	OrthoFinder output from all 47 species
Smo230012	AtRABA5d, RABA5d	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Solyc10g045550.2.1	ATRABA2A,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Spa_g12437	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e006210_P001	RABA2b,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0072488	ammonium transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	44	204

External Links

No external refs found!

Dcu_g50243 (AtRABA5a, RABA5a)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation