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  5. Dcu_g49838

Dcu_g49838


Description : not classified & original description: none


Gene families : OG0012413 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012413_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g49838
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Als_g03884 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g10903 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g29351 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 604 626
IPR002885 Pentatricopeptide_repeat 805 829
IPR002885 Pentatricopeptide_repeat 335 378
IPR002885 Pentatricopeptide_repeat 528 576
IPR002885 Pentatricopeptide_repeat 266 309
IPR002885 Pentatricopeptide_repeat 164 212
IPR002885 Pentatricopeptide_repeat 730 777
IPR002885 Pentatricopeptide_repeat 632 676
IPR002885 Pentatricopeptide_repeat 431 475
No external refs found!