Dcu_g48563

Description : component *(eL29) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0004690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004690_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g48563

Target	Alias	Description	ECC score	Gene Family Method
AT3G06680	No alias	Ribosomal L29e protein family	0.04	OrthoFinder output from all 47 species
Azfi_s0095.g043647	No alias	component *(eL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.39G032900.1	Ceric.39G032900	component *(eL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cre03.g207050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Lfl_g18113	No alias	component *(eL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Mp1g23580.1	No alias	component RPL29 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Pp3c14_7570V3.1	Pp3c14_7570	Ribosomal L29e protein family	0.03	OrthoFinder output from all 47 species
Pp3c1_34380V3.1	Pp3c1_34380	Ribosomal L29e protein family	0.01	OrthoFinder output from all 47 species
Smo228166	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005672	transcription factor TFIIA complex	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002673	Ribosomal_L29e	51	90

External Links

No external refs found!

Dcu_g48563

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation