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  5. Dcu_g48542

Dcu_g48542


Description : component *(PININ) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0004599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g48542
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AT1G15200 No alias protein-protein interaction regulator family protein 0.03 OrthoFinder output from all 47 species
Adi_g082737 No alias component *(PININ) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g09559 No alias component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ceric.07G024200.1 Ceric.07G024200 component *(PININ) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Cre09.g387300 No alias RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Gb_25266 No alias component PININ of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Gb_25268 No alias component PININ of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Mp4g01130.1 No alias component PININ of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Solyc01g104560.3.1 Solyc01g104560 component PININ of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Spa_g10046 No alias component *(PININ) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006786 Pinin_SDK_MemA 192 320
No external refs found!