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  5. Dcu_g47928

Dcu_g47928


Description : not classified & original description: none


Gene families : OG0007012 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007012_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g47928

Target Alias Description ECC score Gene Family Method Actions
Cba_g19057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08998 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17287 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g15805 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 141 188
IPR002885 Pentatricopeptide_repeat 492 540
IPR002885 Pentatricopeptide_repeat 376 423
IPR002885 Pentatricopeptide_repeat 233 255
IPR002885 Pentatricopeptide_repeat 261 288
IPR002885 Pentatricopeptide_repeat 350 371
No external refs found!