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  5. Dcu_g46826

Dcu_g46826 (CMT3)


Aliases : CMT3

Description : DNA chromomethylase *(CMT) & original description: none


Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g46826

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00193220 CMT3,... Chromatin organisation.DNA methylation.RNA-independent... 0.16 OrthoFinder output from all 47 species
AT1G69770 CMT3 chromomethylase 3 0.05 OrthoFinder output from all 47 species
Adi_g014234 CMT2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g060185 CMT3 DNA chromomethylase *(CMT) & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g089629 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g07783 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
Als_g09491 CMT3 DNA chromomethylase *(CMT) & original description: none 0.11 OrthoFinder output from all 47 species
Als_g30424 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g28229 CMT2 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10939 CMT3 DNA chromomethylase *(CMT) & original description: none 0.13 OrthoFinder output from all 47 species
Aspi01Gene43679.t1 CMT3, Aspi01Gene43679 DNA chromomethylase *(CMT) & original description: none 0.13 OrthoFinder output from all 47 species
Azfi_s0003.g007336 CMT2 DNA chromomethylase *(CMT) & original description: CDS=1-1743 0.05 OrthoFinder output from all 47 species
Azfi_s0028.g023875 CMT3 DNA chromomethylase *(CMT) & original description: CDS=5-2743 0.05 OrthoFinder output from all 47 species
Azfi_s0099.g044024 CMT3 DNA chromomethylase *(CMT) & original description: CDS=252-2663 0.04 OrthoFinder output from all 47 species
Ceric.12G007000.1 CMT3, Ceric.12G007000 DNA chromomethylase *(CMT) & original description:... 0.2 OrthoFinder output from all 47 species
Ceric.34G031800.1 CMT3, Ceric.34G031800 DNA chromomethylase *(CMT) & original description:... 0.09 OrthoFinder output from all 47 species
Dac_g12073 CMT3 DNA chromomethylase *(CMT) & original description: none 0.14 OrthoFinder output from all 47 species
Dde_g25407 CMT3 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01024446001 CMT2 Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
GSVIVT01025386001 CMT3 Chromatin organisation.DNA methylation.RNA-independent... 0.13 OrthoFinder output from all 47 species
GSVIVT01033464001 CMT1, DMT4 Chromatin organisation.DNA methylation.RNA-independent... 0.13 OrthoFinder output from all 47 species
Gb_13672 CMT3 DNA chromomethylase (CMT) 0.16 OrthoFinder output from all 47 species
LOC_Os10g01570.1 CMT3, LOC_Os10g01570 DNA chromomethylase (CMT) 0.16 OrthoFinder output from all 47 species
Len_g07756 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
Len_g24159 CMT3 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g18656 CMT2 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
MA_173651g0010 CMT3 DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Mp6g08650.1 CMT3 DNA chromomethylase (CMT) 0.05 OrthoFinder output from all 47 species
Msp_g14579 CMT3 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g39436 CMT3 DNA chromomethylase *(CMT) & original description: none 0.18 OrthoFinder output from all 47 species
Ppi_g62076 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232 CMT3 DNA chromomethylase *(CMT) & original description: CDS=250-2766 0.09 OrthoFinder output from all 47 species
Solyc01g006100.4.1 CMT3, Solyc01g006100 DNA chromomethylase (CMT) 0.08 OrthoFinder output from all 47 species
Solyc12g100330.2.1 CMT3, Solyc12g100330 DNA chromomethylase (CMT) 0.1 OrthoFinder output from all 47 species
Spa_g08555 CMT3 DNA chromomethylase *(CMT) & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g26095 CMT3 DNA chromomethylase *(CMT) & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g52855 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g07640 CMT3 DNA chromomethylase *(CMT) & original description: none 0.11 OrthoFinder output from all 47 species
Tin_g10202 CMT3 DNA chromomethylase *(CMT) & original description: none 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 113 230
IPR001525 C5_MeTfrase 489 848
IPR023780 Chromo_domain 389 433
No external refs found!