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  5. Dcu_g45170

Dcu_g45170 (PAB2, PABP2, ATPAB2)


Aliases : PAB2, PABP2, ATPAB2

Description : mRNA poly-A-tail binding factor *(PABP) & original description: none


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g45170
Cluster HCCA: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
AT5G03580 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene47319.t1 PAB8, PABP8,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016951001 PAB6 Protein biosynthesis.translation initiation.mRNA... 0.05 OrthoFinder output from all 47 species
Solyc09g008620.3.1 PAB7, Solyc09g008620 mRNA poly-A-tail binding factor (PABP) 0.07 OrthoFinder output from all 47 species
Solyc10g085750.2.1 PAB7, Solyc10g085750 mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Zm00001e037390_P001 PAB5, Zm00001e037390 mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 112 184
IPR000504 RRM_dom 203 270
IPR000504 RRM_dom 293 361
IPR000504 RRM_dom 396 456
IPR002004 PABP_HYD 649 714
No external refs found!