Aliases : emb1688
Description : ribosome biogenesis factor *(RsgA) & original description: none
Gene families : OG0006436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006436_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G67440 | emb1688 | Minichromosome maintenance (MCM2/3/5) family protein | 0.03 | OrthoFinder output from all 47 species | |
AT1G67460 | No alias | Minichromosome maintenance (MCM2/3/5) family protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g074991 | emb1688 | ribosome biogenesis factor *(RsgA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.28G055500.1 | emb1688, Ceric.28G055500 | ribosome biogenesis factor *(RsgA) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001073.23 | emb1688 | Small ribosomal subunit biogenesis GTPase RsgA 1,... | 0.02 | OrthoFinder output from all 47 species | |
Cre10.g436600 | emb1688 | Small ribosomal subunit biogenesis GTPase RsgA 1,... | 0.02 | OrthoFinder output from all 47 species | |
Len_g54024 | emb1688 | ribosome biogenesis factor *(RsgA) & original description: none | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003924 | GTPase activity | IEA | Interproscan |
MF | GO:0005525 | GTP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016853 | isomerase activity | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR010914 | RsgA_GTPase_dom | 254 | 463 |
No external refs found! |