Dcu_g43241


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g43241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014360 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17771 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g58851 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40546 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18871 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17591.t1 Aspi01Gene17591 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene37396.t1 Aspi01Gene37396 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000557 OTP86 not classified & original description: CDS=1-2739 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000996 OTP84 not classified & original description: CDS=1-3012 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036353 No alias not classified & original description: CDS=1-2463 0.03 OrthoFinder output from all 47 species
Azfi_s0229.g059121 CRR22 not classified & original description: CDS=1-2070 0.04 OrthoFinder output from all 47 species
Azfi_s0515.g074972 No alias not classified & original description: CDS=1-2211 0.03 OrthoFinder output from all 47 species
Cba_g67468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75350 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G074600.1 Ceric.06G074600 not classified & original description: pacid=50619733... 0.04 OrthoFinder output from all 47 species
Dde_g04006 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01024606001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 OrthoFinder output from all 47 species
Gb_33545 CRR22 RNA editing factor (MEF3) 0.04 OrthoFinder output from all 47 species
LOC_Os03g43420.1 OSB1, LOC_Os03g43420 ssDNA-binding protein (OSB) 0.05 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.04 OrthoFinder output from all 47 species
Len_g03880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56586 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g00934 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
MA_82569g0020 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Msp_g03994 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g18275 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21989 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g22892 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g10372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g02310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03361 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03395 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g05441 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46650 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57077 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57665 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63473 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g63502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05294 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14613 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g007850.2.1 Solyc01g007850 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Tin_g11538 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16670 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g23001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g34486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.04 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.05 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 828 872
IPR002885 Pentatricopeptide_repeat 585 607
IPR002885 Pentatricopeptide_repeat 149 174
IPR002885 Pentatricopeptide_repeat 786 809
IPR002885 Pentatricopeptide_repeat 382 403
IPR002885 Pentatricopeptide_repeat 710 758
IPR002885 Pentatricopeptide_repeat 508 556
IPR002885 Pentatricopeptide_repeat 408 455
IPR002885 Pentatricopeptide_repeat 205 253
IPR002885 Pentatricopeptide_repeat 610 657
IPR002885 Pentatricopeptide_repeat 307 354
No external refs found!