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  5. Dcu_g41978

Dcu_g41978 (emb1629, APO2)


Aliases : emb1629, APO2

Description : organelle RNA splicing factor *(APO) & original description: none


Gene families : OG0001840 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001840_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Dcu_g41978
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00027190 emb1629, APO2,... APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00024p00189370 APO1,... APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT5G57930 emb1629, APO2 Arabidopsis thaliana protein of unknown function (DUF794) 0.03 OrthoFinder output from all 47 species
Adi_g048690 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07882 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G068200.1 emb1629, APO2,... organelle RNA splicing factor *(APO) & original... 0.06 OrthoFinder output from all 47 species
Ceric.26G036600.1 emb1629, APO2,... organelle RNA splicing factor *(APO) & original... 0.03 OrthoFinder output from all 47 species
Dac_g09235 APO1 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26163 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018392001 APO1 APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_29513 APO1 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os04g52520.4 APO1, LOC_Os04g52520 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g02046 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g26504 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08363 APO1 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03107 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009377 emb1629, APO2 organelle RNA splicing factor *(APO) & original... 0.04 OrthoFinder output from all 47 species
Solyc08g080250.4.1 APO1, Solyc08g080250 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Spa_g24427 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e006942_P002 APO1, Zm00001e006942 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e023481_P001 emb1629, APO2,... APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023342 APO_dom 363 487
IPR023342 APO_dom 107 290
No external refs found!