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  5. Dcu_g41888

Dcu_g41888 (NAF1, ATNAF1)


Aliases : NAF1, ATNAF1

Description : non-core component *(NAF1) of H/ACA snoRNP RNA pseudouridylation complex & original description: none


Gene families : OG0004285 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004285_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g41888

Target Alias Description ECC score Gene Family Method Actions
Adi_g008909 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.06 OrthoFinder output from all 47 species
Aev_g12784 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Als_g21824 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
Cba_g23307 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Ceric.04G032200.1 NAF1, ATNAF1,... non-core component *(NAF1) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
Ceric.14G085100.1 NAF1, ATNAF1,... non-core component *(NAF1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Ehy_g21276 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01030569001 NAF1, ATNAF1 RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder output from all 47 species
LOC_Os05g42300.1 NAF1, ATNAF1,... non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.04 OrthoFinder output from all 47 species
Len_g29886 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
MA_127987g0010 NAF1, ATNAF1 non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.03 OrthoFinder output from all 47 species
Mp8g14120.1 NAF1, ATNAF1 non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.03 OrthoFinder output from all 47 species
Ore_g18288 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Sam_g11615 No alias non-core component *(NAF1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species
Solyc07g054460.4.1 NAF1, ATNAF1,... non-core component Nhp2/Naf1 of H/ACA small nucleolar... 0.04 OrthoFinder output from all 47 species
Spa_g09397 NAF1, ATNAF1 non-core component *(NAF1) of H/ACA snoRNP RNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 551 630
No external refs found!