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  5. Dcu_g40359

Dcu_g40359


Description : component *(eS1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g40359

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT3G04840 No alias Ribosomal protein S3Ae 0.07 OrthoFinder output from all 47 species
AT4G34670 No alias Ribosomal protein S3Ae 0.07 OrthoFinder output from all 47 species
Adi_g060842 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g060843 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g124961 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g38346 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g18676 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g05100 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0087.g042272 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.10G049700.1 Ceric.10G049700 component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.32G043000.1 Ceric.32G043000 component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Cre13.g568650 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Dac_g13329 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dac_g26683 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g29549 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g18202 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01021836001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Gb_02289 No alias component RPS3a of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os02g18550.1 LOC_Os02g18550 component RPS3a of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g10340.1 LOC_Os03g10340 component RPS3a of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os12g21798.1 LOC_Os12g21798 component RPS3a of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_31004g0010 No alias component RPS3a of SSU proteome 0.05 OrthoFinder output from all 47 species
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.04 OrthoFinder output from all 47 species
Msp_g05152 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g15011 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g60403 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c22_18300V3.1 Pp3c22_18300 Ribosomal protein S3Ae 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025749 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g07669 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo271906 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc03g097900.3.1 Solyc03g097900 component RPS3a of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc06g072490.3.1 Solyc06g072490 component RPS3a of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g05776 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e038777_P001 Zm00001e038777 component RPS3a of SSU proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0051499 D-aminoacyl-tRNA deacylase activity IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 53 258
No external refs found!