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  5. Dcu_g39751

Dcu_g39751


Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g39751

Target Alias Description ECC score Gene Family Method Actions
AT3G13228 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g06321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15226.t1 Aspi01Gene15226 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g73123 AIP2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G095600.1 Ceric.07G095600 not classified & original description: pacid=50626992... 0.04 OrthoFinder output from all 47 species
Dac_g07739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g32754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15526 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019972001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os05g41520.1 RHC1A, LOC_Os05g41520 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
Lfl_g05536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g05103 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g29753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g050040.4.1 ATCRT1, Solyc01g050040 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Spa_g06543 RHC1A not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g15447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 30 60
IPR001841 Znf_RING 218 260
No external refs found!