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  5. Dcu_g39714

Dcu_g39714


Description : not classified & original description: none


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g39714

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0004.g008616 No alias not classified & original description: CDS=390-1862 0.04 OrthoFinder output from all 47 species
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
MA_33942g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Ore_g22013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31565 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005782 No alias not classified & original description: CDS=1-2136 0.03 OrthoFinder output from all 47 species
Zm00001e001546_P001 Zm00001e001546 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e038256_P001 Zm00001e038256 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e039148_P001 Zm00001e039148 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 188 208
IPR025605 OST-HTH/LOTUS_dom 240 317
IPR000504 RRM_dom 357 402
No external refs found!