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  5. Dcu_g39643

Dcu_g39643 (ATRAD54, CHR25, RAD54)


Aliases : ATRAD54, CHR25, RAD54

Description : chromatin remodeling factor *(RAD54) & original description: none


Gene families : OG0003309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g39643
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Adi_g085241 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G046200.1 ATRAD54, CHR25,... chromatin remodeling factor *(RAD54) & original... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.39 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Cre10.g430950 ATRAD54, CHR25, RAD54 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
GSVIVT01031756001 ATRAD54, CHR25, RAD54 Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_22245 ATRAD54, CHR25, RAD54 DNA repair and recombination protein RAD54 OS=Oryza... 0.07 OrthoFinder output from all 47 species
Mp6g06120.1 ATRAD54, CHR25, RAD54 chromatin remodeling factor (Rad54) 0.06 OrthoFinder output from all 47 species
Solyc04g056410.3.1 ATRAD54, CHR25,... chromatin remodeling factor (Rad54) 0.08 OrthoFinder output from all 47 species
Spa_g37488 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g49299 ATRAD54, CHR25, RAD54 chromatin remodeling factor *(RAD54) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g45162 ATRAD54, CHR25, RAD54 chromaTin remodeling factor *(RAD54) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 201 503
IPR001650 Helicase_C 551 668
No external refs found!