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  5. Dcu_g39512

Dcu_g39512 (CRR22)


Aliases : CRR22

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g39512

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00080380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species
Adi_g034429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42949 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g25155 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g16068 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g30812 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g10709 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene35082.t1 Aspi01Gene35082 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g04704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003766001 LPA66 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Len_g05435 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12672 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g11487 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g18759 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g21090 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g39535 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41100 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g41382 SLO1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g42210 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05790 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g04430 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19088 CRR21 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53029 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015038 CRR22 not classified & original description: CDS=1-1620 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022201 No alias not classified & original description: CDS=265-2808 0.02 OrthoFinder output from all 47 species
Tin_g05859 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g35364 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 304 330
IPR002885 Pentatricopeptide_repeat 605 629
IPR002885 Pentatricopeptide_repeat 505 525
IPR002885 Pentatricopeptide_repeat 531 577
IPR002885 Pentatricopeptide_repeat 433 480
IPR002885 Pentatricopeptide_repeat 127 175
IPR002885 Pentatricopeptide_repeat 331 378
IPR002885 Pentatricopeptide_repeat 229 272
No external refs found!