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  5. Dcu_g38756

Dcu_g38756


Description : not classified & original description: none


Gene families : OG0004459 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004459_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g38756

Target Alias Description ECC score Gene Family Method Actions
AT2G33435 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g084143 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g04168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13459 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g13184 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09620 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene59651.t1 Aspi01Gene59651 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59653.t1 Aspi01Gene59653 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.29G067000.1 Ceric.29G067000 not classified & original description: pacid=50625433... 0.05 OrthoFinder output from all 47 species
Ehy_g21118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01027871001 No alias Splicing factor U2af large subunit A OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_32245 No alias Splicing factor U2af large subunit A OS=Triticum... 0.03 OrthoFinder output from all 47 species
LOC_Os03g04520.2 LOC_Os03g04520 Splicing factor U2af large subunit B OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Lfl_g38674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10110465g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_176544g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sam_g19439 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g24443 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g090420.4.1 Solyc09g090420 Splicing factor U2af large subunit B OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Spa_g40272 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g40273 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e038951_P001 Zm00001e038951 Splicing factor U2af large subunit A OS=Nicotiana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 542 610
No external refs found!