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  5. Dcu_g38746

Dcu_g38746 (PTB2, ATPTB2)


Aliases : PTB2, ATPTB2

Description : RNA splicing factor *(PTB) & original description: none


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Dcu_g38746

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00143110 PTB2, ATPTB2,... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Als_g10256 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G100400.1 PTB2, ATPTB2,... RNA splicing factor *(PTB) & original description:... 0.04 OrthoFinder output from all 47 species
Gb_09196 PTB2, ATPTB2 PTB-type RNA splicing factor 0.04 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os08g33830.1 PTB1, PTB,... PTB-type RNA splicing factor 0.01 OrthoFinder output from all 47 species
Lfl_g06615 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11612 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04014 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020441_P003 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0017182 peptidyl-diphthamide metabolic process IEP HCCA
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018202 peptidyl-histidine modification IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1900247 regulation of cytoplasmic translational elongation IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 22 72
IPR021790 PTBP1-like_RRM2 260 338
No external refs found!