Dcu_g38590


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g38590
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00190360 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
AT2G35030 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G44880 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G40405 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g086259 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g097059 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g34629 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g44555 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07681 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g15073 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03223 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03252 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05685 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06767 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07446 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18405 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32399 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05266 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05294 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06037 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g06520 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22148 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22756 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24197 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g26948 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27311 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27890 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27896 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28235 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28242 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g36268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31466.t1 Aspi01Gene31466 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65777.t1 Aspi01Gene65777 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000446 No alias not classified & original description: CDS=1-2970 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008781 No alias not classified & original description: CDS=1-2346 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011259 No alias not classified & original description: CDS=1-2301 0.04 OrthoFinder output from all 47 species
Azfi_s0032.g024817 No alias not classified & original description: CDS=20-3643 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g033972 OTP84 not classified & original description: CDS=1-2028 0.03 OrthoFinder output from all 47 species
Azfi_s0081.g038640 OTP86 not classified & original description: CDS=63-2522 0.03 OrthoFinder output from all 47 species
Azfi_s0113.g045914 No alias not classified & original description: CDS=1-2748 0.03 OrthoFinder output from all 47 species
Azfi_s0128.g048778 No alias not classified & original description: CDS=1-2676 0.03 OrthoFinder output from all 47 species
Azfi_s0194.g057201 No alias not classified & original description: CDS=1-3408 0.03 OrthoFinder output from all 47 species
Azfi_s0257.g060572 No alias not classified & original description: CDS=1-2448 0.05 OrthoFinder output from all 47 species
Azfi_s0268.g061096 No alias not classified & original description: CDS=119-2467 0.03 OrthoFinder output from all 47 species
Azfi_s0283.g063072 No alias not classified & original description: CDS=1-2475 0.03 OrthoFinder output from all 47 species
Azfi_s0444.g070606 No alias not classified & original description: CDS=1-2982 0.03 OrthoFinder output from all 47 species
Azfi_s0658.g081282 No alias not classified & original description: CDS=13-2166 0.03 OrthoFinder output from all 47 species
Cba_g03349 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03412 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04710 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05882 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06540 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g06542 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07667 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07680 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07756 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g11319 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19473 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22543 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29689 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g29979 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g35174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75325 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g76849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G058600.1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.18G024700.1 Ceric.18G024700 not classified & original description: pacid=50621916... 0.03 OrthoFinder output from all 47 species
Ceric.31G032600.1 CRR22, Ceric.31G032600 not classified & original description: pacid=50574071... 0.06 OrthoFinder output from all 47 species
Dac_g09139 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g13728 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g19046 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g24501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25885 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28766 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33321 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g39373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45607 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08313 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g15280 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17197 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g40678 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009227001 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
GSVIVT01033872001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
LOC_Os04g51350.1 LOC_Os04g51350 RNA editing factor (AEF1) 0.02 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
LOC_Os07g10400.1 CRR22, LOC_Os07g10400 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g30760.1 LOC_Os10g30760 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Len_g08125 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11894 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g14702 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28067 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Msp_g17466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11485 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28112 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g39306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01896 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08941 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17481 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19928 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04645 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07585 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13340 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31296 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g32640 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g35921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56808 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000052 EMB2758 not classified & original description: CDS=1-1683 0.03 OrthoFinder output from all 47 species
Sam_g51263 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g07598 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11331 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g50449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07560 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09422 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21929 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g30430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32155 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e028330_P001 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
Zm00001e035817_P001 Zm00001e035817 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 796 858
IPR002885 Pentatricopeptide_repeat 479 526
IPR002885 Pentatricopeptide_repeat 176 223
IPR002885 Pentatricopeptide_repeat 74 122
IPR002885 Pentatricopeptide_repeat 577 626
IPR002885 Pentatricopeptide_repeat 251 273
IPR002885 Pentatricopeptide_repeat 150 173
IPR002885 Pentatricopeptide_repeat 453 474
IPR002885 Pentatricopeptide_repeat 653 678
IPR002885 Pentatricopeptide_repeat 280 309
IPR002885 Pentatricopeptide_repeat 381 410
IPR002885 Pentatricopeptide_repeat 679 725
No external refs found!