Zm00001d052556 (GRMZM2G127230)

Aliases : GRMZM2G127230

Description : 29.3.3 protein.targeting.chloroplast mutant has Yellow first leaves Chloroplast Signal Recognition Particle Subunit chloroplast signal recognition particle 54 kDa subunit (CPSRP54)

Gene families : OG_01_0005541 (Gene family) Phylogenetic Tree(s): OG0005541_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Zm00001d052556
Cluster	HCCA cluster: Cluster_163

Target	Alias	Description	ECC score	Gene Family Method
AT5G03940	54CP, SRP54CP,...	chloroplast signal recognition particle 54 kDa subunit	0.2	Gene family
Cre11.g479750	No alias	29.3.3 protein.targeting.chloroplast mutant has Yellow...	0.06	Gene family
GSVIVT01033862001	No alias	29.3.3 protein.targeting.chloroplast mutant has Yellow...	0.12	Gene family
LOC_Os11g05552	Os11g0153600	29.3.3 protein.targeting.chloroplast mutant has Yellow...	0.17	Gene family
LOC_Os11g05556	Os11g0153700	29.3.3 protein.targeting.chloroplast mutant has Yellow...	0.09	Gene family
MA_10274946g0010	No alias	29.3.3 protein.targeting.chloroplast mutant has Yellow...	0.03	Gene family
Solyc09g009940.3.1	Solyc09g009940.3	29.3.3 protein.targeting.chloroplast mutant has Yellow...	0.1	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	InterProScan
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	InterProScan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013822	Signal_recog_particl_SRP54_hlx	71	148
IPR000897	SRP54_GTPase_dom	166	360
IPR004125	Signal_recog_particle_SRP54_M	392	492

External Links

No external refs found!

Zm00001d052556 (GRMZM2G127230)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation