Zm00001d052240 (GRMZM2G025409)


Aliases : GRMZM2G025409

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2453 (EMB2453)


Gene families : OG_01_0008605 (Gene family) Phylogenetic Tree(s): OG0008605_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d052240
Cluster HCCA cluster: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT4G39620 EMB2453, ATPPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.12 Gene family
GSVIVT01022204001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os02g51480 Os02g0750400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.09 Gene family
MA_12518g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo135826 PACid_15417188 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc04g054270.3.1 Solyc04g054270.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 157 210
IPR002885 Pentatricopeptide_repeat 232 279
IPR002885 Pentatricopeptide_repeat 126 155
IPR002885 Pentatricopeptide_repeat 306 335
IPR002885 Pentatricopeptide_repeat 396 444
No external refs found!