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  5. Dcu_g26855

Dcu_g26855 (AT-GT2, GT2)


Aliases : AT-GT2, GT2

Description : Trihelix-type transcription factor & original description: none


Gene families : OG0000556 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000556_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g26855

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00147950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.Trihelix... 0.02 OrthoFinder output from all 47 species
Adi_g085245 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene01829.t1 Aspi01Gene01829 Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08402 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Gb_02053 AT-GT2, GT2 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023745 No alias Trihelix-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo24518 AT-GT2, GT2 RNA biosynthesis.transcriptional activation.Trihelix... 0.06 OrthoFinder output from all 47 species
Tin_g40677 No alias Trihelix-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 494 581
IPR044822 Myb_DNA-bind_4 213 299
No external refs found!