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  5. Dcu_g25490

Dcu_g25490


Description : ABC-G-type lipid transporter *(STR) & original description: none


Gene families : OG0000888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g25490

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00181450 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.08 OrthoFinder output from all 47 species
AMTR_s00031p00236610 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00060p00208620 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.09 OrthoFinder output from all 47 species
AT2G13610 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT2G39350 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT3G55090 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT3G55110 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT4G25750 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT5G52860 No alias ABC-2 type transporter family protein 0.02 OrthoFinder output from all 47 species
Aob_g32906 WBC19, ATWBC19 ABC-G-type lipid transporter *(STR) & original description: none 0.1 OrthoFinder output from all 47 species
Aop_g37274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07578.t1 Aspi01Gene07578 subfamily ABCG transporter & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g34793 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.11 OrthoFinder output from all 47 species
Dac_g38683 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g30393 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01014222001 No alias ABC transporter G family member 10 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01028809001 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
GSVIVT01032625001 No alias Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
GSVIVT01037274001 No alias Solute transport.primary active transport.ABC... 0.06 OrthoFinder output from all 47 species
Gb_19188 No alias subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Gb_20468 No alias subfamily ABCG transporter 0.05 OrthoFinder output from all 47 species
LOC_Os03g17350.1 LOC_Os03g17350 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Len_g48614 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g49743 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.1 OrthoFinder output from all 47 species
Len_g50392 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.14 OrthoFinder output from all 47 species
MA_103974g0010 No alias ABC transporter G family member 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10426701g0030 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Mp1g25240.1 No alias subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Mp2g07990.1 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Mp3g16700.1 No alias subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Mp5g15770.1 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Msp_g23417 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g35579 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g39182 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.14 OrthoFinder output from all 47 species
Msp_g43887 WBC19, ATWBC19 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Nbi_g40770 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g26286 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g26296 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g32502 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023718 No alias not classified & original description: CDS=1-2514 0.03 OrthoFinder output from all 47 species
Smo88976 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Smo90494 No alias External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
Solyc03g007690.1.1 Solyc03g007690 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Solyc03g113690.1.1 Solyc03g113690 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Spa_g10980 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g37465 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g40098 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g40276 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e001269_P001 Zm00001e001269 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Zm00001e019365_P001 Zm00001e019365 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Zm00001e027604_P001 Zm00001e027604 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Zm00001e031556_P001 Zm00001e031556 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Zm00001e036158_P002 Zm00001e036158 subfamily ABCG transporter 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 596 808
IPR003439 ABC_transporter-like_ATP-bd 121 273
IPR043926 ABCG_dom 302 358
No external refs found!