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  5. Dcu_g23245

Dcu_g23245 (ATRDRP1, RDR1)


Aliases : ATRDRP1, RDR1

Description : not classified & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g23245
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020904.19 SMD1, RDR2 Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
GSVIVT01011643001 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_10431382g0020 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10435839g0010 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10436273g0010 SMD1, RDR2 RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10436625g0010 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 401 991
No external refs found!