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  5. Dcu_g22106

Dcu_g22106 (emb2746)


Aliases : emb2746

Description : exoribonuclease *(RNase J) & original description: none


Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g22106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00241540 emb2746,... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.02 OrthoFinder output from all 47 species
Ala_g32457 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24290 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G090000.1 emb2746, Ceric.02G090000 exoribonuclease *(RNase J) & original description:... 0.04 OrthoFinder output from all 47 species
GSVIVT01008515001 emb2746 Vesicle trafficking.target membrane tethering.DSL1... 0.03 OrthoFinder output from all 47 species
LOC_Os02g33610.1 emb2746, LOC_Os02g33610 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species
MA_10430099g0010 emb2746 no description available(sp|q84w56|rnj_arath : 150.0) 0.04 OrthoFinder output from all 47 species
Mp3g10830.1 emb2746 exo-/endoribonuclease (RNase J) 0.04 OrthoFinder output from all 47 species
Nbi_g25599 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40893 emb2746 exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c20_9790V3.1 emb2746, Pp3c20_9790 RNA-metabolising metallo-beta-lactamase family protein 0.02 OrthoFinder output from all 47 species
Ppi_g25090 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012058 emb2746 exoribonuclease *(RNase J) & original description: CDS=64-2889 0.03 OrthoFinder output from all 47 species
Sam_g16311 No alias exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g23289 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g111260.3.1 emb2746, Solyc03g111260 exo-/endoribonuclease (RNase J) 0.04 OrthoFinder output from all 47 species
Spa_g18551 emb2746 exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e013900_P001 emb2746, Zm00001e013900 exo-/endoribonuclease (RNase J) 0.04 OrthoFinder output from all 47 species
Zm00001e025070_P003 emb2746, Zm00001e025070 exo-/endoribonuclease (RNase J) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR011108 RMMBL 471 521
IPR044822 Myb_DNA-bind_4 886 972
IPR001279 Metallo-B-lactamas 140 279
No external refs found!