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Aliases : CRR22
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G28660 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g003354 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g069089 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g087163 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g109057 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18401 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g19233 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19295 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g37112 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g18150 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0012.g012931 | No alias | not classified & original description: CDS=1-3024 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0151.g053373 | No alias | not classified & original description: CDS=1-2523 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0242.g059832 | No alias | not classified & original description: CDS=1-2646 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0257.g060586 | No alias | not classified & original description: CDS=1-3168 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0371.g067098 | VAC1, ECB2, ATECB2 | not classified & original description: CDS=1-2013 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g19473 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g49960 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.01G018600.1 | Ceric.01G018600 | not classified & original description: pacid=50592052... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.03G011400.1 | Ceric.03G011400 | not classified & original description: pacid=50571389... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G036800.1 | Ceric.04G036800 | not classified & original description: pacid=50632550... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.10G046000.1 | CRR22, Ceric.10G046000 | ssDNA-binding protein *(OSB) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.11G085300.1 | Ceric.11G085300 | not classified & original description: pacid=50596385... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.12G036800.1 | Ceric.12G036800 | not classified & original description: pacid=50601765... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.18G000100.1 | CRR22, Ceric.18G000100 | ssDNA-binding protein *(OSB) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.18G069700.1 | CRR2, Ceric.18G069700 | not classified & original description: pacid=50622363... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.1Z045400.1 | Ceric.1Z045400 | not classified & original description: pacid=50637450... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.1Z201600.1 | Ceric.1Z201600 | not classified & original description: pacid=50565787... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.20G086100.1 | Ceric.20G086100 | not classified & original description: pacid=50566462... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.25G011600.1 | Ceric.25G011600 | not classified & original description: pacid=50594012... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.25G036300.1 | Ceric.25G036300 | not classified & original description: pacid=50594016... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.29G081800.1 | VAC1, ECB2,... | not classified & original description: pacid=50624309... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.30G066500.1 | Ceric.30G066500 | not classified & original description: pacid=50608384... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.31G032400.1 | CRR22, Ceric.31G032400 | not classified & original description: pacid=50574168... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.33G050800.1 | CRR22, Ceric.33G050800 | not classified & original description: pacid=50606654... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.33G060200.1 | Ceric.33G060200 | not classified & original description: pacid=50607485... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.36G022000.1 | Ceric.36G022000 | not classified & original description: pacid=50568812... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g04892 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g05894 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g05957 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g13603 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g16100 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g16392 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g16419 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g22699 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g23069 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g23534 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g26461 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g30475 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g38451 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g49689 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g50255 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g52009 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01000072001 | No alias | Pentatricopeptide repeat-containing protein At3g05340... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01036142001 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g50280.1 | CRR22, LOC_Os02g50280 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g17570 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g21362 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_20746g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.04 | OrthoFinder output from all 47 species | |
| Mp5g04990.1 | PTAC9, OSB2 | ssDNA-binding protein (OSB). TAC9 cofactor of... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g25474 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g34877 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g02838 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g03413 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g16554 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57530 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g06828 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g22251 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g30421 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53363 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53964 | MEF19 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0003.g002023 | No alias | not classified & original description: CDS=1-2592 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0010.g004867 | No alias | not classified & original description: CDS=342-1943 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0108.g020410 | No alias | not classified & original description: CDS=1-2748 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g07050 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g07051 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14540 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g18488 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g18667 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g19460 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g39953 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g51766 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g005460.1.1 | OTP82, Solyc04g005460 | Pentatricopeptide repeat-containing protein At2g20540... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g23799 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g56533 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e029186_P001 | Zm00001e029186 | Pentatricopeptide repeat-containing protein At1g19720... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041048_P001 | OTP86, Zm00001e041048 | RNA editing factor (OTP86) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 462 | 509 |
| IPR002885 | Pentatricopeptide_repeat | 563 | 610 |
| IPR002885 | Pentatricopeptide_repeat | 159 | 207 |
| IPR002885 | Pentatricopeptide_repeat | 361 | 408 |
| IPR002885 | Pentatricopeptide_repeat | 263 | 290 |
| IPR002885 | Pentatricopeptide_repeat | 637 | 661 |
| IPR002885 | Pentatricopeptide_repeat | 537 | 559 |
| No external refs found! |