Zm00001d050689 (GRMZM2G127690)


Aliases : GRMZM2G127690

Description : 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. plant U-box 29 (PUB29)


Gene families : OG_01_0000079 (Gene family) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d050689
Cluster HCCA cluster: Cluster_295

Target Alias Description ECC score Gene Family Method Actions
AT3G18710 PUB29, ATPUB29 plant U-box 29 0.02 Gene family
AT3G52450 PUB22 plant U-box 22 0.02 Gene family
AT5G09800 No alias ARM repeat superfamily protein 0.03 Gene family
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.05 Gene family
GSVIVT01011139001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
GSVIVT01011140001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
GSVIVT01031720001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.04 Gene family
LOC_Os01g64570 Os01g0865700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
LOC_Os02g33590 Os02g0539200 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
LOC_Os02g33680 Os02g0540700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.05 Gene family
LOC_Os02g34410 Os02g0548700 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.03 Gene family
LOC_Os04g34030 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
LOC_Os04g49970 Os04g0589700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_10432813g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Smo416356 PACid_15422407 No description available 0.02 Gene family
Smo426053 PACid_15404973 No description available 0.02 Gene family
Solyc01g007010.3.1 Solyc01g007010.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Solyc01g007020.3.1 Solyc01g007020.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Solyc01g007030.3.1 Solyc01g007030.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Solyc01g007040.3.1 Solyc01g007040.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.08 Gene family
Solyc01g107980.3.1 Solyc01g107980.3 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.08 Gene family
Solyc04g071030.1.1 Solyc04g071030.1 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.05 Gene family
Solyc06g074140.1.1 Solyc06g074140.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Solyc09g025270.3.1 Solyc09g025270.3 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ARM... 0.03 Gene family
Solyc11g068920.1.1 Solyc11g068920.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Zm00001d016730 GRMZM2G071484 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d025379 GRMZM2G059042 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan
BP GO:0016567 protein ubiquitination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 16 84
No external refs found!