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  5. Dcu_g20213

Dcu_g20213


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g20213
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Adi_g032212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14519 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene09212.t1 Aspi01Gene09212 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.04 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Mp1g07710.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 OrthoFinder output from all 47 species
Nbi_g36090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g58424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015623 No alias not classified & original description: CDS=1-2238 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023267 No alias not classified & original description: CDS=111-2933 0.03 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g52939 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e040095_P002 Zm00001e040095 Pentatricopeptide repeat-containing protein At4g30825,... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 493 549
IPR002885 Pentatricopeptide_repeat 957 1004
IPR002885 Pentatricopeptide_repeat 442 478
IPR002885 Pentatricopeptide_repeat 334 374
IPR002885 Pentatricopeptide_repeat 889 933
IPR002885 Pentatricopeptide_repeat 788 812
IPR002885 Pentatricopeptide_repeat 649 673
IPR002885 Pentatricopeptide_repeat 684 709
IPR002885 Pentatricopeptide_repeat 855 885
IPR002885 Pentatricopeptide_repeat 753 779
IPR002885 Pentatricopeptide_repeat 715 738
IPR002885 Pentatricopeptide_repeat 821 850
IPR002885 Pentatricopeptide_repeat 405 431
No external refs found!