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  5. Dcu_g20176

Dcu_g20176 (NFD2, HMG BETA 1, HMGB2, NFD02)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g20176
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
Cba_g26338 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Sam_g37720 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Tin_g39649 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 117 186
No external refs found!