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  5. Dcu_g19340

Dcu_g19340


Description : not classified & original description: none


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g19340
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Als_g08643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008616 No alias not classified & original description: CDS=390-1862 0.04 OrthoFinder output from all 47 species
Azfi_s0076.g037780 No alias not classified & original description: CDS=1-1272 0.03 OrthoFinder output from all 47 species
Ceric.26G049200.1 Ceric.26G049200 not classified & original description: pacid=50600373... 0.03 OrthoFinder output from all 47 species
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01037782001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Ore_g17242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007845 No alias not classified & original description: CDS=1-2574 0.02 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e024022_P001 Zm00001e024022 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e039148_P001 Zm00001e039148 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
CC GO:0019008 molybdopterin synthase complex IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR025605 OST-HTH/LOTUS_dom 301 378
IPR000504 RRM_dom 418 467
IPR000571 Znf_CCCH 253 274
No external refs found!