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  5. Dcu_g18941

Dcu_g18941 (SNL3, ATSIN3, SIN3)


Aliases : SNL3, ATSIN3, SIN3

Description : component *(SNL) of histone deacetylase machineries & original description: none


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g18941

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00182010 SNL4,... Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
AT1G10450 SNL6 SIN3-like 6 0.03 OrthoFinder output from all 47 species
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.07 OrthoFinder output from all 47 species
AT1G70060 SNL4 SIN3-like 4 0.06 OrthoFinder output from all 47 species
AT3G01320 SNL1 SIN3-like 1 0.05 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.08 OrthoFinder output from all 47 species
Adi_g013447 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Adi_g057345 SNL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088432 SNL3, ATSIN3, SIN3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103364 SNL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21851 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Als_g52097 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Aob_g27014 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aob_g29157 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene56982.t1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Azfi_s0048.g030537 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ceric.02G103600.1 SNL4, Ceric.02G103600 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ceric.02G103800.1 SNL4, Ceric.02G103800 component *(SNL) of histone deacetylase machineries &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021234.23 SNL5 Paired amphipathic helix protein Sin3-like 3... 0.02 OrthoFinder output from all 47 species
Dde_g18720 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
GSVIVT01020136001 SNL3, ATSIN3, SIN3 Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
GSVIVT01032579001 SNL2 Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
LOC_Os01g01960.1 SNL3, ATSIN3,... component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
LOC_Os05g01020.2 SNL4, LOC_Os05g01020 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Lfl_g03500 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
MA_18241g0010 SNL4 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
MA_8638132g0010 SNL4 Paired amphipathic helix protein Sin3-like 3... 0.02 OrthoFinder output from all 47 species
Mp2g12120.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g11300.1 SNL5 Paired amphipathic helix protein Sin3-like 2... 0.02 OrthoFinder output from all 47 species
Msp_g24890 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Nbi_g03860 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ore_g04819 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ore_g28709 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Pir_g13056 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Ppi_g01419 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027077 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Sam_g25571 No alias component *(SNL) of histone deacetylase machineries &... 0.05 OrthoFinder output from all 47 species
Smo440352 SNL4 Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Solyc02g087360.4.1 SNL2, Solyc02g087360 component SNL of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species
Solyc05g006540.3.1 SNL3, ATSIN3,... component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Spa_g15712 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Tin_g19320 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.08 OrthoFinder output from all 47 species
Zm00001e018079_P001 SNL4, Zm00001e018079 Paired amphipathic helix protein Sin3-like 2... 0.05 OrthoFinder output from all 47 species
Zm00001e018082_P001 SNL3, ATSIN3,... Paired amphipathic helix protein Sin3-like 3... 0.04 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Zm00001e040058_P001 Zm00001e040058 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006914 autophagy IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003822 PAH 374 418
IPR003822 PAH 59 102
IPR003822 PAH 150 194
IPR013194 HDAC_interact_dom 517 610
IPR031693 Sin3_C 1210 1457
No external refs found!