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  5. Dcu_g17295

Dcu_g17295


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000614 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17295
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AT1G32360 No alias Zinc finger (CCCH-type) family protein 0.03 OrthoFinder output from all 47 species
Adi_g018593 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g20849 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g01754 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0130.g049031 No alias regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Cba_g10561 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29959 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G007100.1 Ceric.10G007100 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.19G050600.1 Ceric.19G050600 not classified & original description: pacid=50576234... 0.08 OrthoFinder output from all 47 species
Ceric.31G012100.1 Ceric.31G012100 regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Ceric.38G012000.1 Ceric.38G012000 not classified & original description: pacid=50579791... 0.06 OrthoFinder output from all 47 species
Cre11.g476200 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g05290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10013 ZFWD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13206 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Len_g04738 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g57365 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g16999 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ore_g23447 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g59910 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pnu_g08692 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ppi_g02199 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0199.g025558 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0240.g026606 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Spa_g26608 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55076 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g11119 No alias regulatory protein of RNA homeostasis & original... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR041367 Znf-CCCH_4 396 417
IPR000571 Znf_CCCH 450 475
IPR000571 Znf_CCCH 329 353
No external refs found!