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  5. Dcu_g17098

Dcu_g17098


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17098
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.03 OrthoFinder output from all 47 species
Ala_g24403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30597 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36178 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12718 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g28207 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g37595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28706 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene03152.t1 Aspi01Gene03152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g22830 OSB4 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G043000.1 Ceric.02G043000 not classified & original description: pacid=50585529... 0.04 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.04 OrthoFinder output from all 47 species
Ceric.23G042100.1 Ceric.23G042100 not classified & original description: pacid=50611070... 0.04 OrthoFinder output from all 47 species
Ceric.25G002100.1 Ceric.25G002100 not classified & original description: pacid=50593112... 0.04 OrthoFinder output from all 47 species
Dcu_g06376 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06446 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g06512 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06788 No alias ssDNA-binding protein *(OSB) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08223 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08310 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08443 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08554 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08560 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08991 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16581 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g16864 EMB2261 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17049 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17201 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17233 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g17298 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17299 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g17305 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17307 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19270 EMB2261 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21328 OTP84 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g21411 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21476 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g24237 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g26858 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g31896 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35896 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36078 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38407 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g38468 OTP86 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g38650 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g38658 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g39633 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g39841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43242 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43303 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43323 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45746 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45852 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45918 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g45930 CRR22 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g45932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47764 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47920 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g47925 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
LOC_Os02g01610.1 LOC_Os02g01610 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_127785g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Nbi_g38399 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g09573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20793 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22640 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43621 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22838 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22860 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47874 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g52644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06419 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g44704 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e011923_P001 Zm00001e011923 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
Zm00001e041987_P001 Zm00001e041987 Pentatricopeptide repeat-containing protein At2g37320... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 715 739
IPR002885 Pentatricopeptide_repeat 109 134
IPR002885 Pentatricopeptide_repeat 815 839
IPR002885 Pentatricopeptide_repeat 513 538
IPR002885 Pentatricopeptide_repeat 642 671
IPR002885 Pentatricopeptide_repeat 614 634
IPR046848 E_motif 860 916
IPR002885 Pentatricopeptide_repeat 236 283
IPR002885 Pentatricopeptide_repeat 741 788
IPR002885 Pentatricopeptide_repeat 135 181
IPR002885 Pentatricopeptide_repeat 438 485
IPR002885 Pentatricopeptide_repeat 337 384
No external refs found!