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  5. Dcu_g17091

Dcu_g17091


Description : not classified & original description: none


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g17091
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00067630 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
AMTR_s00149p00067730 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g113698 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g02200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08499 EMB2750 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g03973 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.15G014300.1 Ceric.15G014300 not classified & original description: pacid=50639905... 0.04 OrthoFinder output from all 47 species
Ehy_g01446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003493001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
GSVIVT01003496001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.07 OrthoFinder output from all 47 species
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.05 OrthoFinder output from all 47 species
Mp1g08510.1 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.02 OrthoFinder output from all 47 species
Msp_g09352 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01171 SVR7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35489 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc08g077140.1.1 Solyc08g077140 Pentatricopeptide repeat-containing protein At5g46580,... 0.05 OrthoFinder output from all 47 species
Solyc11g012670.1.1 SVR7, Solyc11g012670 Pentatricopeptide repeat-containing protein At4g16390,... 0.02 OrthoFinder output from all 47 species
Spa_g04939 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.03 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 379 439
IPR002885 Pentatricopeptide_repeat 313 370
IPR002885 Pentatricopeptide_repeat 254 298
IPR002885 Pentatricopeptide_repeat 466 494
IPR002885 Pentatricopeptide_repeat 220 249
IPR002885 Pentatricopeptide_repeat 501 530
No external refs found!