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  5. Dcu_g16554

Dcu_g16554 (AGO1)


Aliases : AGO1

Description : miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Dcu_g16554

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00069070 AGO7, ZIP,... Chromatin organisation.DNA methylation.canonical... 0.02 OrthoFinder output from all 47 species
Azfi_s3133.g114643 AGO4, OCP11 not classified & original description: CDS=1-2562 0.03 OrthoFinder output from all 47 species
LOC_Os01g16870.3 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g58490.1 AGO1, LOC_Os02g58490 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
MA_118377g0010 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Mp1g23190.1 AGO9 siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Solyc03g098280.4.1 AGO1, Solyc03g098280 RIS-Complex miRNA recruiting factor (AGO1) 0.02 OrthoFinder output from all 47 species
Solyc06g072300.4.1 AGO1, Solyc06g072300 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Solyc07g049500.3.1 AGO6, Solyc07g049500 siRNA-integrating factor (AGO) 0.03 OrthoFinder output from all 47 species
Zm00001e007233_P001 AGO1, Zm00001e007233 RIS-Complex miRNA recruiting factor (AGO1) 0.03 OrthoFinder output from all 47 species
Zm00001e029696_P001 AGO1, Zm00001e029696 RIS-Complex miRNA recruiting factor (AGO1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003165 Piwi 756 1075
IPR003100 PAZ_dom 472 597
IPR014811 ArgoL1 416 466
IPR032472 ArgoL2 607 653
IPR032473 Argonaute_Mid_dom 664 741
IPR032474 Argonaute_N 272 406
No external refs found!